Tooling & Pipeline

This project has three main “ways in”:

• The nhra_gt Python package (library + simulation engine)
• A reproducible Snakemake pipeline (Snakefile)
• Utility scripts under scripts/

Common tasks

Run the baseline pipeline

The CI workflow runs the baseline and context pack targets via Snakemake:

poetry run snakemake --cores 1 run_baseline context_pack --forceall

Build the context pack

poetry run python scripts/build_context_pack.py

Check parameter traceability

poetry run python scripts/check_parameters_grounded.py

Build the docs locally

poetry run mkdocs build

Run the Streamlit app

poetry run streamlit run streamlit_app.py

Where things live

• Pipeline entrypoint: Snakefile
• Scripts: scripts/
• Package source: src/nhra_gt/
• Documentation source: docs_mkdocs/